IL_2QA4_086

3D structure

PDB id

2QA4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

A more complete structure of the the L7/L12 stalk of the Haloarcula marismortui 50S large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UUC*GUGAG

Length

8 nucleotides

Bulged bases

2QA4|1|0|G|2611, 2QA4|1|0|A|2612

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2QA4_086 not in the Motif Atlas

Geometric match to IL_4V9F_087

Geometric discrepancy: 0.13

The information below is about IL_4V9F_087

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

29

Unit IDs

2QA4|1|0|U|2545
2QA4|1|0|U|2546
2QA4|1|0|C|2547
*
2QA4|1|0|G|2609
2QA4|1|0|U|2610
2QA4|1|0|G|2611
2QA4|1|0|A|2612
2QA4|1|0|G|2613

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain B

50S ribosomal protein L3P

Chain K

50S ribosomal protein L14P