IL_2QA4_093

3D structure

PDB id

2QA4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

A more complete structure of the the L7/L12 stalk of the Haloarcula marismortui 50S large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UGUAC*GGUAG

Length

10 nucleotides

Bulged bases

2QA4|1|0|U|2726

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2QA4_093 not in the Motif Atlas

Homologous match to IL_4V9F_094

Geometric discrepancy: 0.1025

The information below is about IL_4V9F_094

Detailed Annotation

UAA/GAN variation

Broad Annotation

UAA/GAN variation

Motif group

IL_45790.2

Basepair signature

cWW-tSH-L-tHS-cWW

Number of instances in this motif group

12

Unit IDs

2QA4|1|0|U|2724
2QA4|1|0|G|2725
2QA4|1|0|U|2726
2QA4|1|0|A|2727
2QA4|1|0|C|2728
*
2QA4|1|0|G|2754
2QA4|1|0|G|2755
2QA4|1|0|U|2756
2QA4|1|0|A|2757
2QA4|1|0|G|2758

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain B

50S ribosomal protein L3P

Chain U

50S ribosomal protein L24e

Chain X

50S RIBOSOMAL PROTEIN L31E