IL_2QA4_098

3D structure

PDB id

2QA4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

A more complete structure of the the L7/L12 stalk of the Haloarcula marismortui 50S large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UGUGCG*UUAAG

Length

11 nucleotides

Bulged bases

2QA4|1|0|A|2890

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2QA4_098 not in the Motif Atlas

Homologous match to IL_4V9F_099

Geometric discrepancy: 0.1101

The information below is about IL_4V9F_099

Detailed Annotation

tHS double platform

Broad Annotation

No text annotation

Motif group

IL_48489.1

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

8

Unit IDs

2QA4|1|0|U|2864
2QA4|1|0|G|2865
2QA4|1|0|U|2866
2QA4|1|0|G|2867
2QA4|1|0|C|2868
2QA4|1|0|G|2869
*
2QA4|1|0|U|2888
2QA4|1|0|U|2889
2QA4|1|0|A|2890
2QA4|1|0|A|2891
2QA4|1|0|G|2892

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain B

50S ribosomal protein L3P

Chain U

50S ribosomal protein L24e