IL_2QA4_107

3D structure

PDB id

2QA4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

A more complete structure of the the L7/L12 stalk of the Haloarcula marismortui 50S large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGAAG*CAAUGUG

Length

12 nucleotides

Bulged bases

2QA4|1|0|U|263

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2QA4_107 not in the Motif Atlas

Homologous match to IL_4V9F_108

Geometric discrepancy: 0.0669

The information below is about IL_4V9F_108

Detailed Annotation

Kink-turn with embedded cWW pair

Broad Annotation

No text annotation

Motif group

IL_65996.1

Basepair signature

cWW-L-cWW-L-tSH-R-cWW

Number of instances in this motif group

4

Unit IDs

2QA4|1|0|C|245
2QA4|1|0|G|246
2QA4|1|0|A|247
2QA4|1|0|A|248
2QA4|1|0|G|249
*
2QA4|1|0|C|260
2QA4|1|0|A|261
2QA4|1|0|A|262
2QA4|1|0|U|263
2QA4|1|0|G|264
2QA4|1|0|U|265
2QA4|1|0|G|266

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain F

50S ribosomal protein L7Ae

Chain M

50S ribosomal protein L15e