IL_2QEX_009

3D structure

PDB id

2QEX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Negamycin Binds to the Wall of the Nascent Chain Exit Tunnel of the 50S Ribosomal Subunit

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

AG*CAAUGU

Length

8 nucleotides

Bulged bases

2QEX|1|0|U|263

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2QEX_009 not in the Motif Atlas

Homologous match to IL_4V9F_009

Geometric discrepancy: 0.0599

The information below is about IL_4V9F_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_10396.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

6

Unit IDs

2QEX|1|0|A|248
2QEX|1|0|G|249
*
2QEX|1|0|C|260
2QEX|1|0|A|261
2QEX|1|0|A|262
2QEX|1|0|U|263
2QEX|1|0|G|264
2QEX|1|0|U|265

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain F

50S ribosomal protein L7Ae

Chain M

50S ribosomal protein L15e