IL_2QEX_032
3D structure
- PDB id
- 2QEX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Negamycin Binds to the Wall of the Nascent Chain Exit Tunnel of the 50S Ribosomal Subunit
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- CCGAGG*CCGUUUGACG
- Length
- 16 nucleotides
- Bulged bases
- 2QEX|1|0|U|1029, 2QEX|1|0|U|1030
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_2QEX_032 not in the Motif Atlas
- Geometric match to IL_6HCT_003
- Geometric discrepancy: 0.3995
- The information below is about IL_6HCT_003
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_74205.1
- Basepair signature
- cWW-cWW-tSS-tSH-L-tHS-R-cWW-L
- Number of instances in this motif group
- 3
Unit IDs
2QEX|1|0|C|936
2QEX|1|0|C|937
2QEX|1|0|G|938
2QEX|1|0|A|939
2QEX|1|0|G|940
2QEX|1|0|G|941
*
2QEX|1|0|C|1025
2QEX|1|0|C|1026
2QEX|1|0|G|1027
2QEX|1|0|U|1028
2QEX|1|0|U|1029
2QEX|1|0|U|1030
2QEX|1|0|G|1031
2QEX|1|0|A|1032
2QEX|1|0|C|1033
2QEX|1|0|G|1034
Current chains
- Chain 0
- 23S ribosomal RNA
Nearby chains
- Chain O
- 50S ribosomal protein L18e
- Chain Q
- 50S ribosomal protein L21e
- Chain W
- 50S ribosomal protein L30P
Coloring options: