IL_2QEX_056

3D structure

PDB id

2QEX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Negamycin Binds to the Wall of the Nascent Chain Exit Tunnel of the 50S Ribosomal Subunit

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CGAAC*GCAUAG

Length

11 nucleotides

Bulged bases

2QEX|1|0|U|1625

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2QEX_056 not in the Motif Atlas

Homologous match to IL_4V9F_056

Geometric discrepancy: 0.0676

The information below is about IL_4V9F_056

Detailed Annotation

tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_62654.1

Basepair signature

cWW-tSH-tHH-tHS-cWW

Number of instances in this motif group

1

Unit IDs

2QEX|1|0|C|1570
2QEX|1|0|G|1571
2QEX|1|0|A|1572
2QEX|1|0|A|1573
2QEX|1|0|C|1574
*
2QEX|1|0|G|1622
2QEX|1|0|C|1623
2QEX|1|0|A|1624
2QEX|1|0|U|1625
2QEX|1|0|A|1626
2QEX|1|0|G|1627

Current chains

Chain 0

23S ribosomal RNA

Nearby chains