IL_2QEX_101

3D structure

PDB id

2QEX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Negamycin Binds to the Wall of the Nascent Chain Exit Tunnel of the 50S Ribosomal Subunit

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CC*GAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2QEX_101 not in the Motif Atlas

Homologous match to IL_5J7L_357

Geometric discrepancy: 0.092

The information below is about IL_5J7L_357

Detailed Annotation

Major groove minor groove platform; mini C-loop

Broad Annotation

No text annotation

Motif group

IL_68140.4

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

18

Unit IDs

2QEX|1|9|C|3029
2QEX|1|9|C|3030
*
2QEX|1|9|G|3050
2QEX|1|9|A|3051
2QEX|1|9|A|3052
2QEX|1|9|G|3053

Current chains

Chain 9

5S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L5P

Chain N

50S ribosomal protein L18P