IL_2QEX_103

3D structure

PDB id

2QEX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Negamycin Binds to the Wall of the Nascent Chain Exit Tunnel of the 50S Ribosomal Subunit

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GGAGUAC*GGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2QEX_103 not in the Motif Atlas

Homologous match to IL_4V9F_106

Geometric discrepancy: 0.0487

The information below is about IL_4V9F_106

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_02666.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

2QEX|1|9|G|3075
2QEX|1|9|G|3076
2QEX|1|9|A|3077
2QEX|1|9|G|3078
2QEX|1|9|U|3079
2QEX|1|9|A|3080
2QEX|1|9|C|3081
*
2QEX|1|9|G|3101
2QEX|1|9|G|3102
2QEX|1|9|A|3103
2QEX|1|9|A|3104
2QEX|1|9|A|3105
2QEX|1|9|C|3106

Current chains

Chain 9

5S ribosomal RNA

Nearby chains

Chain 0

Large subunit ribosomal RNA; LSU rRNA

Chain H

50S ribosomal protein L10e

Chain W

50S ribosomal protein L30P