IL_2QEX_106

3D structure

PDB id

2QEX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Negamycin Binds to the Wall of the Nascent Chain Exit Tunnel of the 50S Ribosomal Subunit

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CUCUCAUCAGC*GACGUGCG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

2QEX|1|0|C|280
2QEX|1|0|U|281
2QEX|1|0|C|282
2QEX|1|0|U|283
2QEX|1|0|C|284
2QEX|1|0|A|285
2QEX|1|0|U|286
2QEX|1|0|C|287
2QEX|1|0|A|288
2QEX|1|0|G|289
2QEX|1|0|C|290
*
2QEX|1|0|G|362
2QEX|1|0|A|363
2QEX|1|0|C|364
2QEX|1|0|G|365
2QEX|1|0|U|366
2QEX|1|0|G|367
2QEX|1|0|C|368
2QEX|1|0|G|369

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L15e