IL_2UU9_044
3D structure
- PDB id
- 2UU9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a Valine-ASL with cmo5U in position 34 bound to an mRNA with a GUG-codon in the A-site and paromomycin.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GUUGC*GGCACUC
- Length
- 12 nucleotides
- Bulged bases
- 2UU9|1|A|U|1125
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_2UU9_044 not in the Motif Atlas
- Geometric match to IL_4LFB_048
- Geometric discrepancy: 0.2252
- The information below is about IL_4LFB_048
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_89862.1
- Basepair signature
- cWW-L-tHS-L-R-L-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
2UU9|1|A|G|1124
2UU9|1|A|U|1125
2UU9|1|A|U|1126
2UU9|1|A|G|1127
2UU9|1|A|C|1128
*
2UU9|1|A|G|1143
2UU9|1|A|G|1144
2UU9|1|A|C|1145
2UU9|1|A|A|1146
2UU9|1|A|C|1147
2UU9|1|A|U|1148
2UU9|1|A|C|1149
Current chains
- Chain A
- 16S RRNA
Nearby chains
- Chain I
- 30S RIBOSOMAL PROTEIN S9
- Chain J
- 30S RIBOSOMAL PROTEIN S10
Coloring options: