IL_2UUA_033

3D structure

PDB id

2UUA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a Valine-ASL with cmo5U in position 34 bound to an mRNA with a GUC-codon in the A-site and paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CAAAC*GGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2UUA_033 not in the Motif Atlas

Homologous match to IL_4LFB_033

Geometric discrepancy: 0.0478

The information below is about IL_4LFB_033

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_05821.1

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

17

Unit IDs

2UUA|1|A|C|779
2UUA|1|A|A|780
2UUA|1|A|A|781
2UUA|1|A|A|782
2UUA|1|A|C|783
*
2UUA|1|A|G|799
2UUA|1|A|G|800
2UUA|1|A|U|801
2UUA|1|A|A|802
2UUA|1|A|G|803

Current chains

Chain A

16S RRNA

Nearby chains

Chain K

30S RIBOSOMAL PROTEIN S11