IL_2UUA_054

3D structure

PDB id

2UUA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a Valine-ASL with cmo5U in position 34 bound to an mRNA with a GUC-codon in the A-site and paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2UUA_054 not in the Motif Atlas

Homologous match to IL_4LFB_068

Geometric discrepancy: 0.0681

The information below is about IL_4LFB_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25873.1

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

6

Unit IDs

2UUA|1|A|G|1401
2UUA|1|A|C|1402
2UUA|1|A|C|1403
2UUA|1|A|C|1404
*
2UUA|1|A|G|1497
2UUA|1|A|U|1498
2UUA|1|A|A|1499
2UUA|1|A|A|1500
2UUA|1|A|C|1501

Current chains

Chain A

16S RRNA

Nearby chains

Chain X

5'-R(*GP*UP*CP*AP*AP*AP)-3'