IL_2UUA_063

3D structure

PDB id

2UUA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a Valine-ASL with cmo5U in position 34 bound to an mRNA with a GUC-codon in the A-site and paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

AGUUGC*GGCACUCU

Length

14 nucleotides

Bulged bases

2UUA|1|A|U|1125

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

2UUA|1|A|A|1123
2UUA|1|A|G|1124
2UUA|1|A|U|1125
2UUA|1|A|U|1126
2UUA|1|A|G|1127
2UUA|1|A|C|1128
*
2UUA|1|A|G|1143
2UUA|1|A|G|1144
2UUA|1|A|C|1145
2UUA|1|A|A|1146
2UUA|1|A|C|1147
2UUA|1|A|U|1148
2UUA|1|A|C|1149
2UUA|1|A|U|1150

Current chains

Chain A

16S RRNA

Nearby chains

Chain I

30S RIBOSOMAL PROTEIN S9

Chain J

30S RIBOSOMAL PROTEIN S10