IL_2UUB_016

3D structure

PDB id

2UUB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a Valine-ASL with cmo5U in position 34 bound to an mRNA with a GUU-codon in the A-site and paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

UG*UGA

Length

5 nucleotides

Bulged bases

2UUB|1|A|G|388

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2UUB_016 not in the Motif Atlas

Homologous match to IL_5J7L_019

Geometric discrepancy: 0.1046

The information below is about IL_5J7L_019

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.14

Basepair signature

cWW-L-cWW

Number of instances in this motif group

50

Unit IDs

2UUB|1|A|U|375
2UUB|1|A|G|376
*
2UUB|1|A|U|387
2UUB|1|A|G|388
2UUB|1|A|A|389

Current chains

Chain A

16S RRNA

Nearby chains

Chain P

30S RIBOSOMAL PROTEIN S16