IL_2UUB_017
3D structure
- PDB id
- 2UUB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a Valine-ASL with cmo5U in position 34 bound to an mRNA with a GUU-codon in the A-site and paromomycin.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- GGAAGAAG*UGUAAAC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_2UUB_017 not in the Motif Atlas
- Homologous match to IL_4LFB_017
- Geometric discrepancy: 0.0884
- The information below is about IL_4LFB_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_62329.1
- Basepair signature
- cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW
- Number of instances in this motif group
- 2
Unit IDs
2UUB|1|A|G|409
2UUB|1|A|G|410
2UUB|1|A|A|411
2UUB|1|A|A|412
2UUB|1|A|G|413
2UUB|1|A|A|414
2UUB|1|A|A|415
2UUB|1|A|G|416
*
2UUB|1|A|U|427
2UUB|1|A|G|428
2UUB|1|A|U|429
2UUB|1|A|A|430
2UUB|1|A|A|431
2UUB|1|A|A|432
2UUB|1|A|C|433
Current chains
- Chain A
- 16S RRNA
Nearby chains
- Chain D
- 30S RIBOSOMAL PROTEIN S4
Coloring options: