3D structure

PDB id
2UUC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a Valine-ASL with cmo5U in position 34 bound to an mRNA with a GUA-codon in the A-site and paromomycin.
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
GGC*GC
Length
5 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_2UUC_024 not in the Motif Atlas
Homologous match to IL_4LFB_024
Geometric discrepancy: 0.0635
The information below is about IL_4LFB_024
Detailed Annotation
Major groove platform
Broad Annotation
No text annotation
Motif group
IL_48076.6
Basepair signature
cWW-cSH-cWW
Number of instances in this motif group
41

Unit IDs

2UUC|1|A|G|594
2UUC|1|A|G|595
2UUC|1|A|C|596
*
2UUC|1|A|G|644
2UUC|1|A|C|645

Current chains

Chain A
16S RRNA

Nearby chains

Chain H
30S RIBOSOMAL PROTEIN S8
Chain Q
30S RIBOSOMAL PROTEIN S17

Coloring options:


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