IL_2UUC_062

3D structure

PDB id

2UUC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a Valine-ASL with cmo5U in position 34 bound to an mRNA with a GUA-codon in the A-site and paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGAAU*GGAAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2UUC_062 not in the Motif Atlas

Homologous match to IL_4LFB_065

Geometric discrepancy: 0.054

The information below is about IL_4LFB_065

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_49751.4

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

2UUC|1|A|G|673
2UUC|1|A|G|674
2UUC|1|A|A|675
2UUC|1|A|A|676
2UUC|1|A|U|677
*
2UUC|1|A|G|713
2UUC|1|A|G|714
2UUC|1|A|A|715
2UUC|1|A|A|716
2UUC|1|A|C|717

Current chains

Chain A

16S RRNA

Nearby chains

Chain F

30S RIBOSOMAL PROTEIN S6

Chain K

30S RIBOSOMAL PROTEIN S11

Chain R

30S RIBOSOMAL PROTEIN S18