IL_2UUC_064

3D structure

PDB id

2UUC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a Valine-ASL with cmo5U in position 34 bound to an mRNA with a GUA-codon in the A-site and paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CCAGC*GG

Length

7 nucleotides

Bulged bases

2UUC|1|A|C|1129

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2UUC_064 not in the Motif Atlas

Homologous match to IL_5J7L_052

Geometric discrepancy: 0.2866

The information below is about IL_5J7L_052

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_15052.4

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

8

Unit IDs

2UUC|1|A|C|1128
2UUC|1|A|C|1129
2UUC|1|A|A|1130
2UUC|1|A|G|1131
2UUC|1|A|C|1132
*
2UUC|1|A|G|1142
2UUC|1|A|G|1143

Current chains

Chain A

16S RRNA

Nearby chains

Chain I

30S RIBOSOMAL PROTEIN S9