IL_2UXB_036

3D structure

PDB id

2UXB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of an extended tRNA anticodon stem loop in complex with its cognate mRNA GGGU in the context of the Thermus thermophilus 30S subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GA*UAC

Length

5 nucleotides

Bulged bases

2UXB|1|A|A|1394

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2UXB_036 not in the Motif Atlas

Homologous match to IL_6CZR_147

Geometric discrepancy: 0.0982

The information below is about IL_6CZR_147

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

130

Unit IDs

2UXB|1|A|G|922
2UXB|1|A|A|923
*
2UXB|1|A|U|1393
2UXB|1|A|A|1394
2UXB|1|A|C|1395

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain E

RIBOSOMAL PROTEIN S5

Chain G

RIBOSOMAL PROTEIN S7