IL_2UXB_048

3D structure

PDB id

2UXB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of an extended tRNA anticodon stem loop in complex with its cognate mRNA GGGU in the context of the Thermus thermophilus 30S subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UUAG*CUAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary: UUAG,CUAA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2UXB_048 not in the Motif Atlas

Geometric match to IL_6DTD_001

Geometric discrepancy: 0.3762

The information below is about IL_6DTD_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_25872.4

Basepair signature

cWW-cWW-cWH-cWW

Number of instances in this motif group

5

Unit IDs

2UXB|1|A|U|1121
2UXB|1|A|U|1122
2UXB|1|A|A|1123
2UXB|1|A|G|1124
*
2UXB|1|A|C|1149
2UXB|1|A|U|1150
2UXB|1|A|A|1151
2UXB|1|A|A|1152

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain I

RIBOSOMAL PROTEIN S9

Chain J

RIBOSOMAL PROTEIN S10