IL_2UXB_054

3D structure

PDB id

2UXB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of an extended tRNA anticodon stem loop in complex with its cognate mRNA GGGU in the context of the Thermus thermophilus 30S subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CCAC*GGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2UXB_054 not in the Motif Atlas

Geometric match to IL_5J7L_256

Geometric discrepancy: 0.2789

The information below is about IL_5J7L_256

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

2UXB|1|A|C|1259
2UXB|1|A|C|1260
2UXB|1|A|A|1261
2UXB|1|A|C|1262
*
2UXB|1|A|G|1273
2UXB|1|A|G|1274
2UXB|1|A|A|1275
2UXB|1|A|G|1276

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain U

RIBOSOMAL PROTEIN THX