IL_2UXB_062
3D structure
- PDB id
- 2UXB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of an extended tRNA anticodon stem loop in complex with its cognate mRNA GGGU in the context of the Thermus thermophilus 30S subunit.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- UGGGAG*UGACUG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_2UXB_062 not in the Motif Atlas
- Geometric match to IL_4N0T_001
- Geometric discrepancy: 0.3707
- The information below is about IL_4N0T_001
- Detailed Annotation
- Double sheared; A in syn; two near cWW pairs
- Broad Annotation
- Double sheared; A in syn; two near cWW pairs
- Motif group
- IL_71294.3
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 2
Unit IDs
2UXB|1|A|U|1414
2UXB|1|A|G|1415
2UXB|1|A|G|1416
2UXB|1|A|G|1417
2UXB|1|A|A|1418
2UXB|1|A|G|1419
*
2UXB|1|A|U|1481
2UXB|1|A|G|1482
2UXB|1|A|A|1483
2UXB|1|A|C|1484
2UXB|1|A|U|1485
2UXB|1|A|G|1486
Current chains
- Chain A
- 16S RIBOSOMAL RNA
Nearby chains
- Chain L
- RIBOSOMAL PROTEIN S12
Coloring options: