IL_2UXC_016

3D structure

PDB id

2UXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of an extended tRNA anticodon stem loop in complex with its cognate mRNA UCGU in the context of the Thermus thermophilus 30S subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UG*UGA

Length

5 nucleotides

Bulged bases

2UXC|1|A|G|388

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2UXC_016 not in the Motif Atlas

Geometric match to IL_5J7L_019

Geometric discrepancy: 0.0817

The information below is about IL_5J7L_019

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.14

Basepair signature

cWW-L-cWW

Number of instances in this motif group

50

Unit IDs

2UXC|1|A|U|375
2UXC|1|A|G|376
*
2UXC|1|A|U|387
2UXC|1|A|G|388
2UXC|1|A|A|389

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain P

RIBOSOMAL PROTEIN S16