IL_2UXC_033

3D structure

PDB id

2UXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of an extended tRNA anticodon stem loop in complex with its cognate mRNA UCGU in the context of the Thermus thermophilus 30S subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CAAAC*GGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2UXC_033 not in the Motif Atlas

Homologous match to IL_4LFB_033

Geometric discrepancy: 0.0442

The information below is about IL_4LFB_033

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_05821.1

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

17

Unit IDs

2UXC|1|A|C|779
2UXC|1|A|A|780
2UXC|1|A|A|781
2UXC|1|A|A|782
2UXC|1|A|C|783
*
2UXC|1|A|G|799
2UXC|1|A|G|800
2UXC|1|A|U|801
2UXC|1|A|A|802
2UXC|1|A|G|803

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain K

RIBOSOMAL PROTEIN S11