IL_2UXC_039

3D structure

PDB id

2UXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of an extended tRNA anticodon stem loop in complex with its cognate mRNA UCGU in the context of the Thermus thermophilus 30S subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GACAU*AC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2UXC_039 not in the Motif Atlas

Homologous match to IL_4LFB_039

Geometric discrepancy: 0.1821

The information below is about IL_4LFB_039

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_61370.1

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

2UXC|1|A|G|993
2UXC|1|A|A|994
2UXC|1|A|C|995
2UXC|1|A|A|996
2UXC|1|A|U|997
*
2UXC|1|A|A|1044
2UXC|1|A|C|1045

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain N

RIBOSOMAL PROTEIN S14