IL_2UXD_003
3D structure
- PDB id
- 2UXD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of an extended tRNA anticodon stem loop in complex with its cognate mRNA CGGG in the context of the Thermus thermophilus 30S subunit.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- CCUAAG*UAG
- Length
- 9 nucleotides
- Bulged bases
- 2UXD|1|A|C|48, 2UXD|1|A|A|51
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_2UXD_003 not in the Motif Atlas
- Homologous match to IL_4LFB_003
- Geometric discrepancy: 0.139
- The information below is about IL_4LFB_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_14177.2
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
2UXD|1|A|C|47
2UXD|1|A|C|48
2UXD|1|A|U|49
2UXD|1|A|A|50
2UXD|1|A|A|51
2UXD|1|A|G|52
*
2UXD|1|A|U|359
2UXD|1|A|A|360
2UXD|1|A|G|361
Current chains
- Chain A
- 16S RIBOSOMAL RNA
Nearby chains
- Chain G
- RIBOSOMAL PROTEIN S7
- Chain L
- RIBOSOMAL PROTEIN S12
Coloring options: