IL_2UXD_005

3D structure

PDB id

2UXD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of an extended tRNA anticodon stem loop in complex with its cognate mRNA CGGG in the context of the Thermus thermophilus 30S subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGUG*CG

Length

6 nucleotides

Bulged bases

2UXD|1|A|G|64, 2UXD|1|A|U|65

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2UXD_005 not in the Motif Atlas

Homologous match to IL_4LFB_005

Geometric discrepancy: 0.1496

The information below is about IL_4LFB_005

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.4

Basepair signature

cWW-cWW

Number of instances in this motif group

30

Unit IDs

2UXD|1|A|C|63
2UXD|1|A|G|64
2UXD|1|A|U|65
2UXD|1|A|G|66
*
2UXD|1|A|C|103
2UXD|1|A|G|104

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain T

RIBOSOMAL PROTEIN S20