IL_2UXD_035

3D structure

PDB id

2UXD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of an extended tRNA anticodon stem loop in complex with its cognate mRNA CGGG in the context of the Thermus thermophilus 30S subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GA*UAC

Length

5 nucleotides

Bulged bases

2UXD|1|A|A|1394

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2UXD_035 not in the Motif Atlas

Homologous match to IL_4LFB_035

Geometric discrepancy: 0.1309

The information below is about IL_4LFB_035

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

2UXD|1|A|G|922
2UXD|1|A|A|923
*
2UXD|1|A|U|1393
2UXD|1|A|A|1394
2UXD|1|A|C|1395

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain E

RIBOSOMAL PROTEIN S5

Chain G

RIBOSOMAL PROTEIN S7