IL_2UXD_043
3D structure
- PDB id
- 2UXD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of an extended tRNA anticodon stem loop in complex with its cognate mRNA CGGG in the context of the Thermus thermophilus 30S subunit.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- CGUC*GUCUG
- Length
- 9 nucleotides
- Bulged bases
- 2UXD|1|A|U|1196
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_2UXD_043 not in the Motif Atlas
- Geometric match to IL_1D4R_001
- Geometric discrepancy: 0.2484
- The information below is about IL_1D4R_001
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_85033.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
2UXD|1|A|C|1060
2UXD|1|A|G|1061
2UXD|1|A|U|1062
2UXD|1|A|C|1063
*
2UXD|1|A|G|1193
2UXD|1|A|U|1194
2UXD|1|A|C|1195
2UXD|1|A|U|1196
2UXD|1|A|G|1197
Current chains
- Chain A
- 16S RIBOSOMAL RNA
Nearby chains
- Chain C
- RIBOSOMAL PROTEIN S3
- Chain E
- RIBOSOMAL PROTEIN S5
- Chain G
- RIBOSOMAL PROTEIN S7
- Chain I
- RIBOSOMAL PROTEIN S9
- Chain J
- RIBOSOMAL PROTEIN S10
- Chain N
- RIBOSOMAL PROTEIN S14
- Chain X
- ANTICODON STEM-LOOP OF TRANSFER RNA WITH ANTICODON CCCG
- Chain Y
- A-SITE MESSENGER RNA FRAGMENT CGGG
Coloring options: