IL_2UXD_058

3D structure

PDB id

2UXD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of an extended tRNA anticodon stem loop in complex with its cognate mRNA CGGG in the context of the Thermus thermophilus 30S subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGAAG*CGAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2UXD_058 not in the Motif Atlas

Geometric match to IL_4LFB_062

Geometric discrepancy: 0.0922

The information below is about IL_4LFB_062

Detailed Annotation

UAA/GAN variation

Broad Annotation

UAA/GAN variation

Motif group

IL_77691.5

Basepair signature

cWW-tSH-L-R-L-cWW

Number of instances in this motif group

7

Unit IDs

2UXD|1|A|C|1431
2UXD|1|A|G|1432
2UXD|1|A|A|1433
2UXD|1|A|A|1434
2UXD|1|A|G|1435
*
2UXD|1|A|C|1466
2UXD|1|A|G|1467
2UXD|1|A|A|1468
2UXD|1|A|G|1469

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain T

RIBOSOMAL PROTEIN S20