IL_2UXD_060

3D structure

PDB id

2UXD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of an extended tRNA anticodon stem loop in complex with its cognate mRNA CGGG in the context of the Thermus thermophilus 30S subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UGG*CUGA

Length

7 nucleotides

Bulged bases

2UXD|1|A|G|388

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2UXD_060 not in the Motif Atlas

Homologous match to IL_6CZR_128

Geometric discrepancy: 0.2017

The information below is about IL_6CZR_128

Detailed Annotation

Single bulged G, near cWW

Broad Annotation

Single bulged G, near cWW

Motif group

IL_52767.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

2UXD|1|A|U|375
2UXD|1|A|G|376
2UXD|1|A|G|377
*
2UXD|1|A|C|386
2UXD|1|A|U|387
2UXD|1|A|G|388
2UXD|1|A|A|389

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain G

RIBOSOMAL PROTEIN S7

Chain P

RIBOSOMAL PROTEIN S16