IL_2VPL_002

3D structure

PDB id

2VPL (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the complex between the first domain of L1 protein from Thermus thermophilus and mRNA from Methanococcus jannaschii

Experimental method

X-RAY DIFFRACTION

Resolution

2.3 Å

Loop

Sequence

UC*GAA

Length

5 nucleotides

Bulged bases

2VPL|1|B|A|29

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

112

Unit IDs

2VPL|1|B|U|16
2VPL|1|B|C|17
*
2VPL|1|B|G|28
2VPL|1|B|A|29
2VPL|1|B|A|30

Current chains

Chain B

FRAGMENT OF MRNA FOR L1-OPERON CONTAINING REGULATOR L1-BINDING SITE

Nearby chains

Chain A

50S RIBOSOMAL PROTEIN L1

Chain D

FRAGMENT OF MRNA FOR L1-OPERON CONTAINING REGULATOR L1-BINDING SITE