IL_2VQE_016

3D structure

PDB id

2VQE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified uridines with C5-methylene substituents at the first position of the tRNA anticodon stabilize U-G wobble pairing during decoding

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

UG*UGA

Length

5 nucleotides

Bulged bases

2VQE|1|A|G|388

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2VQE_016 not in the Motif Atlas

Homologous match to IL_5J7L_019

Geometric discrepancy: 0.0779

The information below is about IL_5J7L_019

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.14

Basepair signature

cWW-L-cWW

Number of instances in this motif group

50

Unit IDs

2VQE|1|A|U|375
2VQE|1|A|G|376
*
2VQE|1|A|U|387
2VQE|1|A|G|388
2VQE|1|A|A|389

Current chains

Chain A

16S RRNA

Nearby chains

Chain P

30S RIBOSOMAL PROTEIN S16