IL_2VQE_044

3D structure

PDB id

2VQE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified uridines with C5-methylene substituents at the first position of the tRNA anticodon stabilize U-G wobble pairing during decoding

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

GUUG*CACUC

Length

9 nucleotides

Bulged bases

2VQE|1|A|U|1125

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

2VQE|1|A|G|1124
2VQE|1|A|U|1125
2VQE|1|A|U|1126
2VQE|1|A|G|1127
*
2VQE|1|A|C|1145
2VQE|1|A|A|1146
2VQE|1|A|C|1147
2VQE|1|A|U|1148
2VQE|1|A|C|1149

Current chains

Chain A

16S RRNA

Nearby chains

Chain I

30S RIBOSOMAL PROTEIN S9

Chain J

30S RIBOSOMAL PROTEIN S10