IL_2VQE_052
3D structure
- PDB id
- 2VQE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Modified uridines with C5-methylene substituents at the first position of the tRNA anticodon stabilize U-G wobble pairing during decoding
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.5 Å
Loop
- Sequence
- GCCC*GUAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_2VQE_052 not in the Motif Atlas
- Homologous match to IL_4LFB_068
- Geometric discrepancy: 0.0673
- The information below is about IL_4LFB_068
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_25873.2
- Basepair signature
- cWW-cSH-cWS-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
2VQE|1|A|G|1401
2VQE|1|A|C|1402
2VQE|1|A|C|1403
2VQE|1|A|C|1404
*
2VQE|1|A|G|1497
2VQE|1|A|U|1498
2VQE|1|A|A|1499
2VQE|1|A|A|1500
2VQE|1|A|C|1501
Current chains
- Chain A
- 16S RRNA
Nearby chains
- Chain L
- 30S RIBOSOMAL PROTEIN S12
- Chain X
- 5'-R(*UP*UP*AP*AP*AP*AP)-3'
Coloring options: