IL_2VQE_060
3D structure
- PDB id
- 2VQE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Modified uridines with C5-methylene substituents at the first position of the tRNA anticodon stabilize U-G wobble pairing during decoding
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.5 Å
Loop
- Sequence
- GGAAU*GGAAC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_2VQE_060 not in the Motif Atlas
- Homologous match to IL_4LFB_065
- Geometric discrepancy: 0.0491
- The information below is about IL_4LFB_065
- Detailed Annotation
- Triple non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_71154.1
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 10
Unit IDs
2VQE|1|A|G|673
2VQE|1|A|G|674
2VQE|1|A|A|675
2VQE|1|A|A|676
2VQE|1|A|U|677
*
2VQE|1|A|G|713
2VQE|1|A|G|714
2VQE|1|A|A|715
2VQE|1|A|A|716
2VQE|1|A|C|717
Current chains
- Chain A
- 16S RRNA
Nearby chains
- Chain F
- 30S RIBOSOMAL PROTEIN S6
- Chain K
- 30S RIBOSOMAL PROTEIN S11
- Chain R
- 30S RIBOSOMAL PROTEIN S18
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