IL_2VQF_013

3D structure

PDB id

2VQF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified uridines with C5-methylene substituents at the first position of the tRNA anticodon stabilize U-G wobble pairing during decoding

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GG*UGGCC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2VQF_013 not in the Motif Atlas

Homologous match to IL_4LFB_013

Geometric discrepancy: 0.0639

The information below is about IL_4LFB_013

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_06671.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

10

Unit IDs

2VQF|1|A|G|292
2VQF|1|A|G|293
*
2VQF|1|A|U|304
2VQF|1|A|G|305
2VQF|1|A|G|306
2VQF|1|A|C|307
2VQF|1|A|C|308

Current chains

Chain A

16S RRNA

Nearby chains

Chain L

30S RIBOSOMAL PROTEIN S12

Chain P

30S RIBOSOMAL PROTEIN S16