IL_2VQF_018
3D structure
- PDB id
- 2VQF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Modified uridines with C5-methylene substituents at the first position of the tRNA anticodon stabilize U-G wobble pairing during decoding
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- GGACG*CGGUAC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_2VQF_018 not in the Motif Atlas
- Homologous match to IL_4LFB_018
- Geometric discrepancy: 0.09
- The information below is about IL_4LFB_018
- Detailed Annotation
- 6x5 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_82100.1
- Basepair signature
- cWW-tWW-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 3
Unit IDs
2VQF|1|A|G|446
2VQF|1|A|G|447
2VQF|1|A|A|448
2VQF|1|A|C|449
2VQF|1|A|G|450
*
2VQF|1|A|C|483
2VQF|1|A|G|484
2VQF|1|A|G|485
2VQF|1|A|U|486
2VQF|1|A|A|487
2VQF|1|A|C|488
Current chains
- Chain A
- 16S RRNA
Nearby chains
- Chain D
- 30S RIBOSOMAL PROTEIN S4
- Chain P
- 30S RIBOSOMAL PROTEIN S16
Coloring options: