IL_2WW9_003
3D structure
- PDB id
- 2WW9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the active yeast Ssh1 complex bound to the yeast 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.6 Å
Loop
- Sequence
- GAAC*GAGUGAAAAAGUAC
- Length
- 18 nucleotides
- Bulged bases
- 2WW9|1|E|A|556, 2WW9|1|E|A|560
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_2WW9_003 not in the Motif Atlas
- Geometric match to IL_5J7L_255
- Geometric discrepancy: 0.1688
- The information below is about IL_5J7L_255
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_81516.2
- Basepair signature
- cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L
- Number of instances in this motif group
- 6
Unit IDs
2WW9|1|E|G|534
2WW9|1|E|A|535
2WW9|1|E|A|536
2WW9|1|E|C|537
*
2WW9|1|E|G|548
2WW9|1|E|A|549
2WW9|1|E|G|550
2WW9|1|E|U|551
2WW9|1|E|G|552
2WW9|1|E|A|553
2WW9|1|E|A|554
2WW9|1|E|A|555
2WW9|1|E|A|556
2WW9|1|E|A|557
2WW9|1|E|G|558
2WW9|1|E|U|559
2WW9|1|E|A|560
2WW9|1|E|C|561
Current chains
- Chain E
- 25S RRNA
Nearby chains
- Chain A
- SEC SIXTY-ONE PROTEIN HOMOLOG
- Chain I
- 60S RIBOSOMAL PROTEIN L17-A
- Chain L
- 60S RIBOSOMAL PROTEIN L26-A
- Chain O
- 60S RIBOSOMAL PROTEIN L39
Coloring options: