IL_2WWB_001

3D structure

PDB id

2WWB (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF THE MAMMALIAN SEC61 COMPLEX BOUND TO THE ACTIVELY TRANSLATING WHEAT GERM 80S RIBOSOME

Experimental method

ELECTRON MICROSCOPY

Resolution

6.48 Å

Loop

Sequence

UAA*UCGA

Length

7 nucleotides

Bulged bases

2WWB|1|D|C|94

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2WWB_001 not in the Motif Atlas

Geometric match to IL_5Y7M_007

Geometric discrepancy: 0.2738

The information below is about IL_5Y7M_007

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

215

Unit IDs

2WWB|1|D|U|64
2WWB|1|D|A|65
2WWB|1|D|A|66
*
2WWB|1|D|U|93
2WWB|1|D|C|94
2WWB|1|D|G|95
2WWB|1|D|A|96

Current chains

Chain D

5.8S RRNA

Nearby chains

Chain L

60S RIBOSOMAL PROTEIN L26-A

Chain N

60S RIBOSOMAL PROTEIN L35