IL_2WWB_003
3D structure
- PDB id
- 2WWB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF THE MAMMALIAN SEC61 COMPLEX BOUND TO THE ACTIVELY TRANSLATING WHEAT GERM 80S RIBOSOME
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.48 Å
Loop
- Sequence
- GAAC*GAGUGAAAAAGUAC
- Length
- 18 nucleotides
- Bulged bases
- 2WWB|1|E|A|556, 2WWB|1|E|A|560
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_2WWB_003 not in the Motif Atlas
- Geometric match to IL_5J7L_255
- Geometric discrepancy: 0.1652
- The information below is about IL_5J7L_255
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_81516.2
- Basepair signature
- cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L
- Number of instances in this motif group
- 6
Unit IDs
2WWB|1|E|G|534
2WWB|1|E|A|535
2WWB|1|E|A|536
2WWB|1|E|C|537
*
2WWB|1|E|G|548
2WWB|1|E|A|549
2WWB|1|E|G|550
2WWB|1|E|U|551
2WWB|1|E|G|552
2WWB|1|E|A|553
2WWB|1|E|A|554
2WWB|1|E|A|555
2WWB|1|E|A|556
2WWB|1|E|A|557
2WWB|1|E|G|558
2WWB|1|E|U|559
2WWB|1|E|A|560
2WWB|1|E|C|561
Current chains
- Chain E
- 25S RRNA
Nearby chains
- Chain A
- PROTEIN TRANSPORT PROTEIN SEC61 SUBUNIT ALPHA ISOFORM 1
- Chain I
- 60S RIBOSOMAL PROTEIN L17-A
- Chain L
- 60S RIBOSOMAL PROTEIN L26-A
- Chain O
- 60S RIBOSOMAL PROTEIN L39
Coloring options: