IL_2WWB_006

3D structure

PDB id

2WWB (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF THE MAMMALIAN SEC61 COMPLEX BOUND TO THE ACTIVELY TRANSLATING WHEAT GERM 80S RIBOSOME

Experimental method

ELECTRON MICROSCOPY

Resolution

6.48 Å

Loop

Sequence

CAC*GG

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2WWB_006 not in the Motif Atlas

Geometric match to IL_7A0S_005

Geometric discrepancy: 0.1854

The information below is about IL_7A0S_005

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

48

Unit IDs

2WWB|1|G|C|1918
2WWB|1|G|A|1919
2WWB|1|G|C|1920
*
2WWB|1|G|G|1928
2WWB|1|G|G|1929

Current chains

Chain G

25S RRNA

Nearby chains

Chain J

60S RIBOSOMAL PROTEIN L19