IL_2X7N_001

3D structure

PDB id

2X7N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanism of eIF6s anti-association activity

Experimental method

ELECTRON MICROSCOPY

Resolution

11.8 Å

Loop

Sequence

AUAGUAC*GGAACU

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2X7N_001 not in the Motif Atlas

Geometric match to IL_4V9F_106

Geometric discrepancy: 0.1979

The information below is about IL_4V9F_106

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_02666.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

2X7N|1|A|A|2689
2X7N|1|A|U|2690
2X7N|1|A|A|2691
2X7N|1|A|G|2692
2X7N|1|A|U|2693
2X7N|1|A|A|2694
2X7N|1|A|C|2695
*
2X7N|1|A|G|2700
2X7N|1|A|G|2701
2X7N|1|A|A|2702
2X7N|1|A|A|2703
2X7N|1|A|C|2704
2X7N|1|A|U|2705

Current chains

Chain A

SARCIN-RICIN LOOP

Nearby chains

Chain B

EUKARYOTIC TRANSLATION INITIATION FACTOR 6