IL_2XZM_017

3D structure

PDB id

2XZM (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH INITIATION FACTOR 1. THIS FILE CONTAINS THE 40S SUBUNIT AND INITIATION FACTOR FOR MOLECULE 1

Experimental method

X-RAY DIFFRACTION

Resolution

3.93 Å

Loop

Sequence

UAUCAG*CAGUCACG

Length

14 nucleotides

Bulged bases

2XZM|1|A|U|304, 2XZM|1|A|U|342, 2XZM|1|A|C|343

QA status

QA data not found

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65553.5

Basepair signature

cWW-cSS-tSS-L-tSH-tSS-tHS-tHW-cWW-tHS-cWW

Number of instances in this motif group

22

Unit IDs

2XZM|1|A|U|302
2XZM|1|A|A|303
2XZM|1|A|U|304
2XZM|1|A|C|305
2XZM|1|A|A|306
2XZM|1|A|G|307
*
2XZM|1|A|C|339
2XZM|1|A|A|340
2XZM|1|A|G|341
2XZM|1|A|U|342
2XZM|1|A|C|343
2XZM|1|A|A|344
2XZM|1|A|C|345
2XZM|1|A|G|346

Current chains

Chain A

18S RRNA

Nearby chains

Chain 2

40S RIBOSOMAL PROTEIN S8

Chain L

40S RIBOSOMAL PROTEIN S12

Chain Q

RIBOSOMAL PROTEIN S17 CONTAINING PROTEIN