3D structure

PDB id
2XZM (explore in PDB, NAKB, or RNA 3D Hub)
Description
CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH INITIATION FACTOR 1. THIS FILE CONTAINS THE 40S SUBUNIT AND INITIATION FACTOR FOR MOLECULE 1
Experimental method
X-RAY DIFFRACTION
Resolution
3.93 Å

Loop

Sequence
GUAUUUC*GUAAUC
Length
13 nucleotides
Bulged bases
2XZM|1|A|U|1463, 2XZM|1|A|U|1464, 2XZM|1|A|A|1488, 2XZM|1|A|U|1489
QA status
QA data not found

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_02690.1
Basepair signature
cWW-tSS-L-cSS-R-L-L-L-L-cWW
Number of instances in this motif group
1

Unit IDs

2XZM|1|A|G|1459
2XZM|1|A|U|1460
2XZM|1|A|A|1461
2XZM|1|A|U|1462
2XZM|1|A|U|1463
2XZM|1|A|U|1464
2XZM|1|A|C|1465
*
2XZM|1|A|G|1485
2XZM|1|A|U|1486
2XZM|1|A|A|1487
2XZM|1|A|A|1488
2XZM|1|A|U|1489
2XZM|1|A|C|1490

Current chains

Chain A
18S RRNA

Nearby chains

Chain C
KH DOMAIN CONTAINING PROTEIN
Chain J
RIBOSOMAL PROTEIN S10 CONTAINING PROTEIN
Chain N
RPS29E
Chain T
RPS19E

Coloring options:

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