IL_2Y9H_001

3D structure

PDB id

2Y9H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure A of CRISPR endoribonuclease Cse3 bound to 19 nt RNA

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

UCC*GA

Length

5 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2Y9H_001 not in the Motif Atlas

Geometric match to IL_5VCI_005

Geometric discrepancy: 0.1535

The information below is about IL_5VCI_005

Detailed Annotation

Not an internal loop

Broad Annotation

Not an internal loop

Motif group

IL_64417.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

18

Unit IDs

2Y9H|1|B|U|5
2Y9H|1|B|C|6
2Y9H|1|B|C|7
*
2Y9H|1|B|G|20
2Y9H|1|B|A|22

Current chains

Chain B

5'-R(*UP*CP*CP*CP*CP*AP*CP*GP*CP*GP*UP*GP*UP*GP *GP*GP*DGP*AP*UP)-3'

Nearby chains

Chain A

CSE3