IL_2ZI0_001

3D structure

PDB id

2ZI0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Tav2b/siRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

2.82 Å

Loop

Sequence

UUA*UUA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Isolated near basepair

Broad Annotation

Isolated near basepair

Motif group

IL_42997.1

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

18

Unit IDs

2ZI0|1|C|U|9
2ZI0|1|C|U|10
2ZI0|1|C|A|11
*
2ZI0|1|D|U|9
2ZI0|1|D|U|10
2ZI0|1|D|A|11

Current chains

Chain C

RNA (5'-D(P*AP*GP*AP*CP*AP*GP*CP*AP*UP*UP*AP*UP*GP*CP*UP*GP*UP*CP*UP*UP*U)-3')

Chain D

RNA (5'-D(P*AP*GP*AP*CP*AP*GP*CP*AP*UP*UP*AP*UP*GP*CP*UP*GP*UP*CP*UP*UP*U)-3')

Nearby chains

Chain A

Protein 2b

Chain B

Protein 2b