IL_2ZJP_035

3D structure

PDB id

2ZJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Nosiheptide bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CUCAGUG*CUCAAG

Length

13 nucleotides

Bulged bases

2ZJP|1|X|C|1152

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2ZJP_035 not in the Motif Atlas

Geometric match to IL_4WF9_039

Geometric discrepancy: 0.2129

The information below is about IL_4WF9_039

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.6

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

6

Unit IDs

2ZJP|1|X|C|1029
2ZJP|1|X|U|1030
2ZJP|1|X|C|1031
2ZJP|1|X|A|1032
2ZJP|1|X|G|1033
2ZJP|1|X|U|1034
2ZJP|1|X|G|1035
*
2ZJP|1|X|C|1150
2ZJP|1|X|U|1151
2ZJP|1|X|C|1152
2ZJP|1|X|A|1153
2ZJP|1|X|A|1154
2ZJP|1|X|G|1155

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain 4

50S RIBOSOMAL PROTEIN L36

Chain E

50S RIBOSOMAL PROTEIN L6

Chain G

50S RIBOSOMAL PROTEIN L13