IL_2ZJP_047

3D structure

PDB id

2ZJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Nosiheptide bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GGUU*AC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2ZJP_047 not in the Motif Atlas

Homologous match to IL_5J7L_290

Geometric discrepancy: 0.1768

The information below is about IL_5J7L_290

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_50694.7

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

27

Unit IDs

2ZJP|1|X|G|1323
2ZJP|1|X|G|1324
2ZJP|1|X|U|1325
2ZJP|1|X|U|1326
*
2ZJP|1|X|A|1619
2ZJP|1|X|C|1620

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain 2

50S RIBOSOMAL PROTEIN L34

Chain Q

50S RIBOSOMAL PROTEIN L23